Second strain of flu may complicate picture

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A second strain of influenza, one of the seasonal strains, may have mutated and may be complicating the picture in Mexico, Canadian researchers reported on Wednesday.

They have found a strain of the H3N2 virus that appears to have made a shift and could have complicated the flu picture in Mexico, epicenter of an outbreak of a new strain of the H1N1 swine flu virus.

One was seen in a traveler returning from Mexico, the team at the British Columbia Centre for Disease Control reported to Pro-MED, an online forum for infectious disease experts. And it may have been involved in an unusually late outbreak of flu in long-term care facilities this year.

The new H1N1 virus has killed at least 42 people in Mexico and two in the United States, has spread globally and brought the world to the brink of a pandemic. It appears to act like seasonal flu but doctors have been confused because it has also killed some young and apparently healthy adults - not the usual pattern for influenza, which picks off the elderly, chronically ill and very young.

Danuta Skowronski and colleagues said they routinely sequence the hemagglutinin gene from a sample of influenza viruses submitted each season by community doctors, hospitals and care facilities across the province of British Columbia, Canada. Hemagglutinin gives a flu virus the “H” in its name, as in H1N1 or H3N2, and is found on the surface of the virus.

Vaccines target hemagglutinin and when it changes, the vaccine must be changed, too. This year the vaccine targets strains of H3N2 influenza, an H1N1 strain different from the new swine flu strain, and an influenza B strain.

“Until mid-February 2009, amino acid sequences of the hemagglutinin gene of H3 viruses in British Columbia were virtually identical to the vaccine strain,” Skowronski wrote.

“In early March 2009, however, we detected additional differences from the vaccine strain among British Columbia viruses collected from facility outbreak settings.” They only found these changes in flu samples taken from patients in care facilities.

When news broke of the new H1N1 strain, they ran more tests.

“We have sequenced the hemagglutinin gene of one of the H3 viruses from an ill traveler returning from Mexico and find it shares the same ... changes,” they wrote.

“In British Columbia, these H3 mutations arose sometime in early March 2009 and we observe at least one returning traveler to have likely acquired illness due to this virus in Mexico,” they wrote.

“We thus also wonder to what extent the profile of influenza-like illness initially reported from mid-March in Mexico may in part be attributed to this H3N2 variant in addition to emergence of the novel A/H1N1 virus.”

By Maggie Fox
WASHINGTON (Reuters)

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Even though the virus is relatively mild for many people, the economic impact will be enormous. That combined with the financial crisis will have large implications. Schools are closing in the United Kingdom and I believe 100 have shut in the United States at the time of writing. History tells us that the generally there is a second wave of a virus that is typically much worse than the first. Modern science means that there is a good chance of a vaccine being created in the months between the first phase and the second phase. Expect to see more viral infections spreading rapidly across the globe as: 1. world population increases 2. global travel increases 3. our reliance on antibiotics and processed food weakens our natural defences. Fingers crossed that this pandemic will be contained rapidly.

posted by Steve Gargett on 05/07/2009 at 7:08 am -08:00